Ubuntu: HDF5 error: HDF5 header version does not match with the HDF5 library - linux - newfreesoft.com

Home

PC Games

Linux

Windows

Database

Network

Programming

Server

Mobile


	Home \ Linux \ Ubuntu: HDF5 error: HDF5 header version does not match with the HDF5 library			- Basic data types JavaScript type system and the type of packaging (Programming) - Oracle partition table data migration, process management automation (Database) - Linux text processing tool of sed (Linux) - How to defragment the hard disk in Linux (Linux) - Linux System Administrator Network Security Experience (Linux) - MacBook Air install Ubuntu dual system (Linux) - GNU Linux use diff to generate a patch with the patch (Linux) - In Spring AOP example explanation (Programming) - Why not use the ifconfig command under RedHat Linux 5 (Linux) - Linux Oracle environment variable is invalid Problem Solving (Database) - Hibernate + JUnit test entity class generate database table (Programming) - Linux Getting Started Tutorial: How to set up a static MAC address on VMware ESXi virtual machine (Mobile) - Transfer files to Windows and Linux (Linux) - Fun music library in Linux using command line (Linux) - Android Fragment everything you need to know (Programming) - How to configure Ceph stored on CentOS 7.0 (Server) - Machine Learning: Classification of the curse of dimensionality (Programming) - RHEL7.0 log system (Linux) - Use Visual Studio to compile and use WinGDB remote debugging embedded Linux programs (Programming) - Approach the next Linux shared interrupts (Linux)

	Ubuntu: HDF5 error: HDF5 header version does not match with the HDF5 library
	Add Date : 2018-11-21



	Today in the implementation of a python script used hdf5 encountered the following error Warning! * HDF5 library version mismatched error * The HDF5 header files used to compile this application do not match the version used by the HDF5 library to which this application is linked. Data corruption or segmentation faults may occur if the application continues. This can happen when an application was compiled by one version of HDF5 but linked with a different version of static or shared HDF5 library. You should recompile the application or check your shared library related settings such as 'LD_LIBRARY_PATH'. You can, at your own risk, disable this warning by setting the environment variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'. Setting it to 2 or higher will suppress the warning messages totally. Headers are 1.8.11, library is 1.8.9 SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.8.9 Configured on: Fri Dec 20 12:54:14 CST 2013 Configured by: ilan @ CentOS5x64 Configure mode: production Host system: x86_64-unknown-linux-gnu Uname information: Linux centos5x64 2.6.18-348.el5 # 1 SMP Tue Jan 8 17:53:53 EST 2013 x86_64 x86_64 x86_64 GNU / Linux Byte sex: little-endian Libraries: Installation point: / opt / anaconda1anaconda2anaconda3 Compiling Options: ------------------ Compilation Mode: production C Compiler: / usr / bin / gcc (gcc (GCC) 4.1.2 20080704) CFLAGS: H5_CFLAGS: -std = c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing -prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute -Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wformat = 2 -Wunreachable-code -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch -Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe -loop-optimizations -Wc ++ - compat -Wvolatile-register-var -O3 -fomit-frame-pointer -finline-functions AM_CFLAGS: CPPFLAGS: H5_CPPFLAGS: -D_POSIX_C_SOURCE = 199506L -DNDEBUG -UH5_DEBUG_API AM_CPPFLAGS: -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE Shared C Library: yes Static C Library: no Statically Linked Executables: no LDFLAGS: H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lpthread -lz -lrt -lm Archiver: ar Ranlib: ranlib Debugged Packages: API Tracing: no Languages: ---------- Fortran: no C ++: no Features: --------- Parallel HDF5: no High Level library: yes Threadsafety: yes Default API Mapping: v18 With Deprecated Public Symbols: yes I / O filters (external): deflate (zlib) I / O filters (internal): shuffle, fletcher32, nbit, scaleoffset MPE: no Direct VFD: no dmalloc: no Clear file buffers before write: yes Using memory checker: no Function Stack Tracing: no GPFS: no Strict File Format Checks: no Optimization Instrumentation: no Large File Support (LFS): yes Bye ... Aborted (core dumped) Good yesterday, today, how there is a problem. He recalled a moment like yesterday updated anaconda, could lead to a conflict, the view, indeed. hdf5 library Anaconda 1.8.9 is installed, but prior to the adoption pip intall h5py library should be the 1.8.11, the mountain can not be two tigers, then delete the old version sudo pip uninstall h5py Press Enter, and she has h5py previous version in the system comes with python Uninstalling h5py: /usr/local/lib/python2.7/dist-packages/h5py-2.3.1.egg-info /usr/local/lib/python2.7/dist-packages/h5py/__init__.py /usr/local/lib/python2.7/dist-packages/h5py/__init__.pyc /usr/local/lib/python2.7/dist-packages/h5py/_conv.so /usr/local/lib/python2.7/dist-packages/h5py/_errors.so /usr/local/lib/python2.7/dist-packages/h5py/_hl/__init__.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/__init__.pyc /usr/local/lib/python2.7/dist-packages/h5py/_hl/attrs.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/attrs.pyc /usr/local/lib/python2.7/dist-packages/h5py/_hl/base.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/base.pyc /usr/local/lib/python2.7/dist-packages/h5py/_hl/dataset.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/dataset.pyc /usr/local/lib/python2.7/dist-packages/h5py/_hl/datatype.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/datatype.pyc /usr/local/lib/python2.7/dist-packages/h5py/_hl/dims.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/dims.pyc /usr/local/lib/python2.7/dist-packages/h5py/_hl/files.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/files.pyc /usr/local/lib/python2.7/dist-packages/h5py/_hl/filters.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/filters.pyc /usr/local/lib/python2.7/dist-packages/h5py/_hl/group.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/group.pyc /usr/local/lib/python2.7/dist-packages/h5py/_hl/selections.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/selections.pyc /usr/local/lib/python2.7/dist-packages/h5py/_hl/selections2.py /usr/local/lib/python2.7/dist-packages/h5py/_hl/selections2.pyc /usr/local/lib/python2.7/dist-packages/h5py/_objects.so /usr/local/lib/python2.7/dist-packages/h5py/_proxy.so /usr/local/lib/python2.7/dist-packages/h5py/defs.so /usr/local/lib/python2.7/dist-packages/h5py/h5.so /usr/local/lib/python2.7/dist-packages/h5py/h5a.so /usr/local/lib/python2.7/dist-packages/h5py/h5ac.so /usr/local/lib/python2.7/dist-packages/h5py/h5d.so /usr/local/lib/python2.7/dist-packages/h5py/h5ds.so /usr/local/lib/python2.7/dist-packages/h5py/h5f.so /usr/local/lib/python2.7/dist-packages/h5py/h5fd.so /usr/local/lib/python2.7/dist-packages/h5py/h5g.so /usr/local/lib/python2.7/dist-packages/h5py/h5i.so /usr/local/lib/python2.7/dist-packages/h5py/h5l.so /usr/local/lib/python2.7/dist-packages/h5py/h5o.so /usr/local/lib/python2.7/dist-packages/h5py/h5p.so /usr/local/lib/python2.7/dist-packages/h5py/h5r.so /usr/local/lib/python2.7/dist-packages/h5py/h5s.so /usr/local/lib/python2.7/dist-packages/h5py/h5t.so /usr/local/lib/python2.7/dist-packages/h5py/h5z.so /usr/local/lib/python2.7/dist-packages/h5py/highlevel.py /usr/local/lib/python2.7/dist-packages/h5py/highlevel.pyc /usr/local/lib/python2.7/dist-packages/h5py/ipy_completer.py /usr/local/lib/python2.7/dist-packages/h5py/ipy_completer.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/__init__.py /usr/local/lib/python2.7/dist-packages/h5py/tests/__init__.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/common.py /usr/local/lib/python2.7/dist-packages/h5py/tests/common.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_attrs.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_attrs.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_attrs_data.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_attrs_data.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_base.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_base.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_dataset.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_dataset.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_datatype.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_datatype.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_dimension_scales.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_dimension_scales.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_file.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_file.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_group.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_group.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_h5.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_h5.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_h5f.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_h5f.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_h5p.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_h5p.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_h5t.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_h5t.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_objects.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_objects.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_selections.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_selections.pyc /usr/local/lib/python2.7/dist-packages/h5py/tests/test_slicing.py /usr/local/lib/python2.7/dist-packages/h5py/tests/test_slicing.pyc /usr/local/lib/python2.7/dist-packages/h5py/utils.so /usr/local/lib/python2.7/dist-packages/h5py/version.py /usr/local/lib/python2.7/dist-packages/h5py/version.pyc Proceed (y / n)? Y Successfully uninstalled h5py



	More:
	- Using IE can also be easily remotely control the computer (Linux) - Linux create and delete user step (Linux) - How to fix fatal error: security / pam_modules.h: No such file or directory (Linux) - Installation and use GAMIT / GLOBK Software (Linux) - Windows Desktop use VNC remote connect Linux (Linux) - Use Spring cache and ehcache (Programming) - C ++ function object (Programming) - Python 3.5 await / async (Programming) - The free command in Linux (Linux) - Minimum period string problem (Programming) - Articles do not resolve after opening under Ubuntu WordPress setting a fixed link (Server) - On the PC goes heavy security watch your startup items (Linux) - Linux and Unix systems really do network more secure (Linux) - Linux set the maximum number of open files nofile and nr_open, file-max Description (Linux) - The Java Properties class action (Programming) - When should I use Angular 2 (Programming) - 11 you Linux Terminal Command (Linux) - Subquery Oracle study notes (Database) - NaSC using simple mathematical operations on Ubuntu and Elementary OS (Linux) - Ubuntu 14.04 after the restart the default maximum screen brightness solutions (Linux)


	CopyRight 2002-2022 newfreesoft.com, All Rights Reserved.